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docs: more comprehensive documentation
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@@ -10,7 +10,10 @@ Welcome to the BetterSEQTA+ documentation! This documentation will help you unde
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- [Project Overview](./README.md) - This file
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- [Installation Guide](./installation.md) - How to install and set up BetterSEQTA+
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- [Contributing Guide](../CONTRIBUTING.md) - How to contribute to BetterSEQTA+
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- [Getting Started Contributing](./GETTING_STARTED_CONTRIBUTING.md) - **Start here!** Complete beginner-friendly guide
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- [Architecture Guide](./ARCHITECTURE.md) - How BetterSEQTA+ works under the hood
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- [Contributing Guide](../CONTRIBUTING.md) - Official contribution guidelines
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- [Troubleshooting](./TROUBLESHOOTING.md) - Common issues and solutions
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### Plugin System
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