updates to docs and also profile

docs/plugins/EXAMPLE_PLUGIN.md

@@ -1,5 +1,7 @@
 # Example Plugin Template
 
+**Published version:** [docs.betterseqta.org/example-plugin/](https://docs.betterseqta.org/example-plugin/)
+
 This is a complete, working example of a simple BetterSEQTA+ plugin. You can copy this code and modify it to create your own plugin!
 
 ## What This Example Does
@@ -328,8 +330,8 @@ Once you've got this working:
 ## Need Help?
 
 - 💬 Ask in our [Discord server](https://discord.gg/YzmbnCDkat)
-- 📚 Read our [Plugin Development Guide](./README.md)
-- 🐛 Check the [Troubleshooting Guide](../TROUBLESHOOTING.md)
+- 📚 Read the [plugin documentation](https://docs.betterseqta.org/plugins/)
+- 🐛 Check the [troubleshooting guide](https://docs.betterseqta.org/troubleshooting/)
 - 📝 Open an issue on GitHub
 
 Happy coding! 🎉 

docs/plugins/README.md

@@ -1,5 +1,7 @@
 # Creating Plugins for BetterSEQTA+
 
+**Published version:** [docs.betterseqta.org/plugins/](https://docs.betterseqta.org/plugins/) · [Plugin development](https://docs.betterseqta.org/plugin-development/) · [Plugin API](https://docs.betterseqta.org/plugin-api/)
+
 Hey there! 👋 So you want to create a plugin for BetterSEQTA+? That's awesome! This guide will walk you through everything you need to know, from the very basics to more advanced features. Don't worry if you're new to this - we'll explain everything step by step.
 
 ## What is a Plugin?
@@ -294,4 +296,4 @@ Got stuck? No worries! Here's where you can get help:
 - Check out the built-in plugins in the `src/plugins/built-in` folder
 - Open an issue on our [GitHub page](https://github.com/betterseqta/betterseqta-plus/issues)
 
-Happy coding and feel free to checkout the api reference [here](./api-reference.md)
+Happy coding and feel free to check out the [plugin API](https://docs.betterseqta.org/plugin-api/) on the documentation site.

docs/plugins/api-reference.md

@@ -1,6 +1,8 @@
 # Plugin API Reference
 
-This document provides detailed technical information about BetterSEQTA+'s plugin APIs. For a beginner-friendly introduction, see [Creating Your First Plugin](./README.md).
+**Published version:** [docs.betterseqta.org/plugin-api/](https://docs.betterseqta.org/plugin-api/)
+
+This document provides detailed technical information about BetterSEQTA+'s plugin APIs. For a beginner-friendly introduction, see the [plugins section](https://docs.betterseqta.org/plugins/) at [docs.betterseqta.org](https://docs.betterseqta.org/).
 
 ## Plugin Structure